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2021

Article dans une revue

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Sélastique Doffou Akaffou, Aimé Kouassi Kouame, Nestor Bi Boh Gore, Georges Yao Abessika, Perla Hamon, et al.. Effect of the seeds provenance and treatment on the germination rate and plants growth of four forest trees species of Côte d’Ivoire. Journal of Forestry Research, Springer Verlag, 2021, 32, pp.161-169. ⟨10.1007/s11676-019-01064-y⟩. ⟨hal-02404222⟩
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Camille Bonhomme, Régis Céréghino, Jean-Francois Carrias, Arthur Compin, Bruno Corbara, et al.. In situ resistance, not immigration, supports invertebrate community resilience to drought intensification in a Neotropical ecosystem. Journal of Animal Ecology, Wiley, In press, ⟨10.1111/1365-2656.13392⟩. ⟨hal-03095319⟩
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Nicolas Bottinelli, Jean-Luc Maeght, V.N. Tran Le, C. Boonchamni, T.T. Doan, et al.. To what extent do ageing and soil properties influence Amynthas khami cast properties? Evidence from a small watershed in northern Vietnam. Applied Soil Ecology, 2021, 158, pp.103792. ⟨10.1016/j.apsoil.2020.103792⟩. ⟨hal-02980357⟩
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Louise Brousseau, Paul V.A. Fine, Erwin Dreyer, Giovanni Vendramin, Ivan Scotti. Genomic and phenotypic divergence unveil microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae). Molecular Ecology, Wiley, In press, ⟨10.1111/mec.15595⟩. ⟨hal-02930429⟩
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Michael Chapwanya, Americo Matusse, Yves Dumont. On synergistic co-infection in crop diseases. The case of the Maize Lethal Necrosis Disease. Applied Mathematical Modelling, Elsevier, 2021, 90, pp.912-942. ⟨10.1016/j.apm.2020.09.036⟩. ⟨hal-02964242⟩
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Anne-Laure Decombeix, Thibault Durieux, Carla Harper, Rudolph Serbet, Edith Taylor. A Permian nurse log and evidence for facilitation in high‐latitude Glossopteris forests. Lethaia, Wiley, 2021, 54 (1), pp.96-105. ⟨10.1111/let.12386⟩. ⟨hal-02569731⟩
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Grégoire T. Freschet, Catherine Roumet, Louise Comas, Monique Weemstra, A. Glyn Bengough, et al.. Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs. New Phytologist, Wiley, In press, ⟨10.1111/nph.17072⟩. ⟨hal-03007086⟩
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Cédric Gaucherel, Camille Carpentier, Ilse R. Geijzendorffer, Camille Noûs, Franck Pommereau. Discrete-event models for conservation assessment of integrated ecosystems. Ecological Informatics, Elsevier, In press, pp.101205. ⟨10.1016/j.ecoinf.2020.101205⟩. ⟨hal-03039548⟩
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Laura Melissa Guzman, M. Kurtis Trzcinski, Ignacio Barberis, Régis Céréghino, Diane Srivastava, et al.. Climate influences the response of community functional traits to local conditions in bromeliad invertebrate communities. Ecography, Wiley, In press, ⟨10.1111/ecog.05437⟩. ⟨hal-03103974⟩
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G. Le Mer, P. Jouquet, Y. Capowiez, Jean-Luc Maeght, T.M. Tran, et al.. Age matters: Dynamics of earthworm casts and burrows produced by the anecic Amynthas khami and their effects on soil water infiltration. Geoderma, 2021, 382, pp.114709. ⟨10.1016/j.geoderma.2020.114709⟩. ⟨hal-02975880⟩
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Sébastien Levionnois, Steven Jansen, Ruth Tchana Wandji, Jacques Beauchêne, Camille Ziegler, et al.. Linking drought‐induced xylem embolism resistance to wood anatomical traits in Neotropical trees. New Phytologist, Wiley, 2021, 229 (3), pp.1453-1466. ⟨10.1111/nph.16942⟩. ⟨hal-02970855⟩
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Grace Jopaul Loubota Panzou, Adeline Fayolle, Tommaso Jucker, Oliver Phillips, Stephanie Bohlman, et al.. Pantropical variability in tree crown allometry. Global Ecology and Biogeography, Wiley, 2021, 30 (2), pp.459-475. ⟨10.1111/geb.13231⟩. ⟨hal-03103872⟩
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Zhun Mao, Julia Centanni, Franck Pommereau, Alexia Stokes, Cédric Gaucherel. Maintaining biodiversity promotes the multifunctionality of social-ecological systems: holistic modelling of a mountain system. Ecosystem Services, Elsevier, 2021, 47, pp.101220. ⟨10.1016/j.ecoser.2020.101220⟩. ⟨hal-03043249⟩
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Luis Merino-Martín, Alexia Stokes, Hyun Gweon, Lur Moragues-Saitua, Siobhan Staunton, et al.. Interacting effects of land use type, soil microbes and plant traits on aggregate stability. Soil Biology and Biochemistry, Elsevier, In press, 154, pp.108072. ⟨10.1016/j.soilbio.2020.108072⟩. ⟨hal-03040299⟩
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Yohan Pillon, Tanguy Jaffré, P. Birnbaum, David Bruy, Dominique Cluzel, et al.. Infertile landscapes on an old oceanic island: the biodiversity hotspot of New Caledonia. Biological Journal of the Linnean Society, Linnean Society of London, In press, p. 1-25. ⟨10.1093/biolinnean/blaa146⟩. ⟨hal-03002846⟩
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Xavier Portell, Ophélie Sauzet, María Balseiro‐romero, Pascal Benard, Rémi Cardinael, et al.. Bypass and hyperbole in soil science: A perspective from the next generation of soil scientists. European Journal of Soil Science, Wiley, 2021, 72 (1), pp.31-34. ⟨10.1111/ejss.13064⟩. ⟨hal-03106863⟩
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Robert Schneider, Tony Franceschini, Emmanuel Duchateau, Alexa Bérubé-Deschênes, Laurie Dupont-Leduc, et al.. Influencing plantation stand structure through close-to-nature silviculture. European Journal of Forest Research, Springer Verlag, In press, ⟨10.1007/s10342-020-01349-6⟩. ⟨hal-03109973⟩
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Leandro van Langenhove, Thomas Depaepe, Lore Verryckt, Lucia Fuchslueger, Julian Donald, et al.. Comparable canopy and soil free-living nitrogen fixation rates in a lowland tropical forest. Science of the Total Environment, Elsevier, 2021, 754, pp.142202. ⟨10.1016/j.scitotenv.2020.142202⟩. ⟨hal-03063571⟩
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Ivric Valaire Yatat Djeumen, Yves Dumont, Anna Doizy, Pierre Couteron. A minimalistic model of vegetation physiognomies in the savanna biome. Ecological Modelling, 2021, 440, pp.109381. ⟨hal-02570303⟩
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Communication dans un congrès

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Eric Justes, Rémi Vezy, Sebastian Munz, Kirsten Paff, Laurent Bedoussac, et al.. Recent advances in intercropping modelling: the new version of the STICS soil-crop model simulates consistently a wide range of bi-specific annual intercrops.. Conference on Intercropping for sustainability. Research developments and their application, Association of Applied Biologists, Jan 2021, Online, France. ⟨hal-03121584⟩
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Chapitre d'ouvrage

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Louise Brousseau, Pauline H. Garnier-Gere, Charles Clément. Historical Genomics. Jean-François Molino; Guillaume Odonne. Methods in Historical Ecology - Insights from Amazonia, Routledge, 2021, 978-0-367-18221-2. ⟨10.4324/9780429060175⟩. ⟨hal-03113371⟩
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Michael Chapwanya, Yves Dumont. Application of Mathematical Epidemiology to crop vector-borne diseases. The cassava mosaic virus disease case. Miranda I. Teboh-Ewungkem; Gideon Akumah Ngwa. Infectious Diseases and our Planet, 7, Springer, 2021, Mathematics of Planet Earth, 978-3-030-50825-8. ⟨10.1007/978-3-030-50826-5_4⟩. ⟨hal-02401399⟩
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Mickaël Mestre, Grégoire Vincent, Caroline Bedeau, Nina Antonoff, Olivier Brunaux, et al.. Detecting Ditched Sites on Lidar-Generated Digital Elevation Models: From technical specifications to interpretation keys. Guillaume Odonne; Jean-François Molino. Methods in Historical Ecology. Insights from Amazonia, Taylor & Francis Group, pp.69-76, 2021, New frontiers in historical ecology, 9780429060175. ⟨halshs-02946822⟩
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Jean-François Molino, William Balée, Julien Engel, Claire Martin, Daniel Sabatier. Forest trees inventories. Methods in historical ecology : insights from Amazonia, Routledge, 2021, New frontiers in historical ecology, 978-0-367-18221-2. ⟨hal-03036198⟩
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Guillaume Odonne, Jean-François Molino. Introduction to “Methods in historical ecology, insights from Amazonia”. Odonne, G.; Molino, J.-F. Methods in historical ecology (insights from Amazonia), Routledge, pp.1-6, 2021, 9780367182212. ⟨hal-03093352⟩
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Ouvrage (y compris édition critique et traduction)

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Guillaume Odonne, Jean-François Molino. Methods in historical ecology : insights from Amazonia. Routledge, pp.210, 2021, New frontiers in historical ecology, 978-0-367-18221-2. ⟨hal-02978634⟩
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Pré-publication, Document de travail

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Louise Chevalier, François de Coligny, Jacques Labonne. A demogenetic individual based model for the evolution of traits and genome architecture under sexual selection. 2021. ⟨hal-03102620⟩
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2020

Article dans une revue

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Roumen Anguelov, Yves Dumont, Ivric Valaire Yatat Djeumen. Sustainable vector/pest control using the permanent sterile insect technique. Mathematical Methods in the Applied Sciences, Wiley, 2020, Special Issue: BIOMATH 2019, 43 (18), pp.10391 - 10412. ⟨10.1002/mma.6385⟩. ⟨hal-02545576⟩
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M. Soledad Aronna, Yves Dumont. On Nonlinear Pest/Vector Control via the Sterile Insect Technique: Impact of Residual Fertility. Bulletin of Mathematical Biology, Springer Verlag, 2020, 82 (8), ⟨10.1007/s11538-020-00790-3⟩. ⟨hal-02930114⟩
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Jacek Banasiak, Yves Dumont, Ivric Valaire Yatat Djeumen. Spreading Speeds and Traveling Waves for Monotone Systems of Impulsive Reaction–Diffusion Equations: Application to Tree–Grass Interactions in Fire-prone Savannas. Differential Equations and Dynamical Systems, 2020, ⟨10.1007/s12591-020-00552-6⟩. ⟨hal-02930082⟩
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Imtinen Ben Haj Jilani, G. Domina, Errol Véla. Leopoldia maritima. The IUCN Red List of Threatened Species, 2020, ⟨10.2305/IUCN.UK.2020-2.RLTS.T91974011A91974139.en⟩. ⟨hal-02957568⟩
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Duong Benoit, Marraccini Pierre, Jean Luc Maeght, Philippe Vaast, Robin Duponnois. Coffee Microbiota and Its Potential Use in Sustainable Crop Management. A Review. Frontiers in Sustainable Food Systems, Frontiers Media, 2020, 4, ⟨10.3389/fsufs.2020.607935⟩. ⟨hal-03045648⟩
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Giorgio Binelli, William Montaigne, Daniel Sabatier, Caroline Scotti-Saintagne, Ivan Scotti. Discrepancies between genetic and ecological divergence patterns suggest a complex biogeographic history in a Neotropical genus. Ecology and Evolution, Wiley Open Access, 2020, 10 (11), pp.4726-4738. ⟨10.1002/ece3.6227⟩. ⟨hal-02539604⟩
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Grégoire Blanchard, Philippe Birnbaum, François Munoz. Extinction–immigration dynamics lag behind environmental filtering in shaping the composition of tropical dry forests within a changing landscape. Ecography, Wiley, 2020, 43 (6), pp.869-881. ⟨10.1111/ecog.04870⟩. ⟨hal-02512987⟩
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Candela Blanco‐moreno, Anne-Laure Decombeix, Cyrille Prestianni. New insights into the affinities, autoecology, and habit of the Mesozoic fern Weichselia reticulata based on the revision of stems from Bernissart (Mons Basin, Belgium). Special papers in palaeontology, Wiley Blackwell Publishing, In press, ⟨10.1002/spp2.1344⟩. ⟨hal-03038289⟩
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Stéphanie Bodin, Jean-François Molino, Guillaume Odonne, Laurent Bremond. Unraveling pre-Columbian occupation patterns in the tropical forests of French Guiana using an anthracological approach. Vegetation History and Archaeobotany, Springer Verlag, 2020, 29 (5), pp.567-580. ⟨10.1007/s00334-019-00767-w⟩. ⟨hal-02441094⟩
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Pierre Bonnet, Hervé Goëau, Frantz Hopkins, Errol Véla, Amandine Sahl, et al.. Contribution citoyenne au suivi de la flore d'un parc national français, un exemple remarquable à l'échelle du Parc national des Cévennes. Carnets Botaniques, Société Botanique d'Occitanie, 2020, pp.1-9. ⟨10.34971/zaz0-n247⟩. ⟨hal-02981760⟩
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Pierre Bonnet, Alexis Joly, Jean-Michel Faton, Susan Brown, David Kimiti, et al.. How citizen scientists contribute to monitor protected areas thanks to automatic plant identification tools. Ecological Solutions and Evidence, Wiley, 2020, 1 (2), ⟨10.1002/2688-8319.12023⟩. ⟨hal-02937618⟩
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Pierre Bonnet, Julien Champ, Hervé Goëau, Fabian-Robert Stöter, Benjamin Deneu, et al.. Biodiversity Information Science and Standards 4: e58933 Pl@ntNet Services, a Contribution to the Monitoring and Sharing of Information on the World Flora. Biodiversity Information Science and Standards, Sofia : Pensoft Publishers, 2017-, 2020, 4, ⟨10.3897/biss.4.58933⟩. ⟨hal-02973673⟩
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Christophe Botella, Alexis Joly, Pascal Monestiez, Pierre Bonnet, François Munoz. Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection. PLoS ONE, Public Library of Science, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩. ⟨hal-02639237⟩
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Clément Bourgoin, Julie Betbeder, Pierre Couteron, Lilian Blanc, Hélène Dessard, et al.. UAV-based canopy textures assess changes in forest structure from long-term degradation. Ecological Indicators, Elsevier, 2020, 115, pp.106386. ⟨10.1016/j.ecolind.2020.106386⟩. ⟨hal-02566581⟩
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Caroline Brunel, Robin Pouteau, Wayne Dawson, Michael Pester, Kelly Ramirez, et al.. Towards Unraveling Macroecological Patterns in Rhizosphere Microbiomes. Trends in Plant Science, Elsevier, 2020, 25 (10), pp.1017-1029. ⟨10.1016/j.tplants.2020.04.015⟩. ⟨hal-02985872⟩
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Sven Buerki, Jérôme Munzinger, Porter Lowry Ii, Martin W. Callmander. Two new genera of Sapindaceae (Cupanieae) from the southern Pacific: Lepidocupania and Neoarytera. Candollea, 2020, 75 (2), pp.269-284. ⟨10.15553/c2020v752a9⟩. ⟨hal-03021637⟩
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Yang Cao, Yanan Li, Guangqi Zhang, Jing Zhang, Meng Chen. Fine root C:N:P stoichiometry and its driving factors across forest ecosystems in northwestern China. Science of the Total Environment, Elsevier, 2020, 737, pp.140299. ⟨10.1016/j.scitotenv.2020.140299⟩. ⟨hal-02892263⟩
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Yves Caraglio. Les arbres, des timides ?. Jardins de France, 2020, 658. ⟨hal-02870008⟩
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Rémi Cardinael, Zhun Mao, Claire Chenu, Philippe Hinsinger. Belowground functioning of agroforestry systems: recent advances and perspectives. Plant and Soil, Springer Verlag, 2020, 453, pp.1-13. ⟨10.1007/s11104-020-04633-x⟩. ⟨hal-02909292⟩
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Jean-Francois Carrias, Mélanie Gerphagnon, Hector Rodriguez Perez, Guillaume Borrel, Camille Loiseau, et al.. Resource availability drives bacterial succession during leaf-litter decomposition in a bromeliad ecosystem. FEMS Microbiology Ecology, Wiley-Blackwell, 2020, 96 (4), ⟨10.1093/femsec/fiaa045⟩. ⟨hal-02880883⟩
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Régis Cereghino, Bruno Corbara, Céline Leroy, Jean-Francois Carrias. Ecological determinants of community structure across the trophic levels of freshwater food webs: a test using bromeliad phytotelmata. Hydrobiologia, Springer, 2020, 847, pp.391 - 402. ⟨10.1007/s10750-019-04100-4⟩. ⟨hal-02365612⟩
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Régis Céréghino, Léa Françoise, Camille Bonhomme, Jean-Francois Carrias, Arthur Compin, et al.. Desiccation resistance traits predict freshwater invertebrate survival and community response to drought scenarios in a Neotropical ecosystem. Ecological Indicators, Elsevier, 2020, 119, pp.106839. ⟨10.1016/j.ecolind.2020.106839⟩. ⟨hal-02965179⟩
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Lucie Chabal, Christine Heinz. Reconstructing the heterogeneity of past woodlands in anthracology using the spatial distribution of charcoals in archaeological layers: Applied to the postglacial occupation of the Abeurador cave (Hérault) in the South of France. Quaternary International, Elsevier, In press, Charcoal Science in Archaeology and Palaeoecology, 7th International Anthracology Meeting, University of Liverpool, UK, 2-6 Sept. 2019, ⟨10.1016/j.quaint.2020.10.080⟩. ⟨hal-03012678⟩
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Julien Champ, Adán Mora‐fallas, Hervé Goëau, Erick Mata‐montero, Pierre Bonnet, et al.. Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots. Applications in Plant Sciences, Wiley, 2020, 8 (7), ⟨10.1002/aps3.11373⟩. ⟨hal-02910844⟩
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Antoine Champreux, Brigitte Meyer-Berthaud, Anne-Laure Decombeix. Keraphyton gen. nov., a new Late Devonian fern-like plant from Australia. PeerJ, PeerJ, 2020, 8, ⟨10.7717/peerj.9321⟩. ⟨hal-02871937⟩
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Jérôme Chave, Camille Piponiot, Isabelle Maréchaux, Hubert de Foresta, Denis Larpin, et al.. Slow rate of secondary forest carbon accumulation in the Guianas compared with the rest of the Neotropics. Ecological Applications, Ecological Society of America, 2020, 30 (1), pp.e02004. ⟨10.1002/eap.2004⟩. ⟨hal-02309463⟩
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Tiphaine Chevallier, Maud Loireau, Romain Courault, Lydie Chapuis-Lardy, Thierry Desjardins, et al.. Paris Climate Agreement: Promoting Interdisciplinary Science and Stakeholders’ Approaches for Multi-Scale Implementation of Continental Carbon Sequestration. Sustainability, MDPI, 2020, 12 (17), pp.6715. ⟨10.3390/su12176715⟩. ⟨hal-02920103⟩
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Courtney Collins, Marko Spasojevic, Concepción Alados, Emma Aronson, Juan Benavides, et al.. Belowground impacts of alpine woody encroachment are determined by plant traits, local climate, and soil conditions. Global Change Biology, Wiley, In press, ⟨10.1111/gcb.15340⟩. ⟨hal-03006624⟩
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Lucy Elizabeth Commander, Luis Merino-Martín, Carole Elliott, Ben Miller, Kingsley Dixon, et al.. Demographic, seed and microsite limitations to seedling recruitment in semi-arid mine site restoration. Plant and Soil, Springer Verlag, 2020, 457 (1-2), pp.113-129. ⟨10.1007/s11104-019-04081-2⟩. ⟨hal-03110101⟩
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Thomas Couvreur, Gilles Dauby, Anne Blach-Overgaard, Vincent Deblauwe, Steven Dessein, et al.. Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna. Biological Reviews, Wiley, 2020, ⟨10.1111/brv.12644⟩. ⟨insu-02940669⟩
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Léo-Paul Dagallier, Steven Janssens, Gilles Dauby, Anne Blach-Overgaard, Barbara Mackinder, et al.. Cradles and museums of generic plant diversity across tropical Africa. New Phytologist, Wiley, 2020, 225 (5), pp.2196-2213. ⟨10.1111/nph.16293⟩. ⟨hal-02407084⟩
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Alain Danet, Florian Schneider, Fabien Anthelme, Sonia Kéfi. Indirect facilitation drives species composition and stability in drylands. Theoretical Ecology, Springer In press. ⟨hal-03023812⟩
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Hendrik Davi, Marion Durand-Gillmann, Claire Damesin, Sylvain Delzon, Cathleen Petit, et al.. Distribution of endemic bark beetle attacks and their physiological consequences on Pinus halepensis. Forest Ecology and Management, Elsevier, 2020, 469, pp.118187. ⟨10.1016/j.foreco.2020.118187⟩. ⟨hal-02877316⟩
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Luciano Margalho, Piero G. Delprete, Milton Groppo. Typification of the two Arariba names published by Martius and of the two Pinckneya names published by Allemão & Saldanha, synonymous with the names of two species of Simira (Rubiaceae, Condamineeae). Phytotaxa, Magnolia Press 2020, 438 (2), pp.141-150. ⟨10.11646/phytotaxa.438.2.7⟩. ⟨hal-02548005⟩
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Patricia Soffiatti, Nick P. Rowe. Mechanical Innovations of a Climbing Cactus: Functional Insights for a New Generation of Growing Robots. Frontiers in Robotics and AI, Frontiers Media S.A., 2020, 7, ⟨10.3389/frobt.2020.00064⟩. ⟨hal-02892041⟩
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Stanislas Talaga, Alain Dejean, Frédéric Azemar, Yves Dumont, Céline Leroy. Impacts of biotic and abiotic parameters on immature populations of Aedes aegypti. Journal of Pest Science, Springer Verlag, 2020, 93 (3), pp.941-952. ⟨10.1007/s10340-020-01214-w⟩. ⟨hal-02778221⟩
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Niklas Tysklind, Marie-Pierre Etienne, Caroline Scotti-Saintagne, Alexandra Tinaut, Maxime Casalis, et al.. Microgeographic local adaptation and ecotype distributions: The role of selective processes on early life‐history traits in sympatric, ecologically divergent Symphonia populations. Ecology and Evolution, Wiley Open Access, 2020, 10 (19), pp.10735-10753. ⟨10.1002/ece3.6731⟩. ⟨hal-02948828⟩
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Rémi Vezy, Guerric Le Maire, Mathias Christina, Selena Georgiou, Pablo Imbach, et al.. DynACof: A process-based model to study growth, yield and ecosystem services of coffee agroforestry systems. Environmental Modelling and Software, Elsevier, 2020, 124, pp.104609. ⟨10.1016/j.envsoft.2019.104609⟩. ⟨hal-02488996⟩
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Xiu-Juan Wang, Meng-Zhen Kang, Xing-Rong Fan, Li-Li Yang, Bao-Gui Zhang, et al.. What are the differences in yield formation among two cucumber (Cucumis sativus L.) cultivars and their F1 hybrid?. Journal of Integrative Agriculture , Elsevier, 2020, 19 (7), pp.1789-1801. ⟨10.1016/S2095-3119(20)63218-X⟩. ⟨hal-02862421⟩
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Dangjun Wang, Huakun Zhou, Buqing Yao, Wenying Wang, Shikui Dong, et al.. Effects of nutrient addition on degraded alpine grasslands of the Qinghai-Tibetan Plateau: A meta-analysis. Agriculture, Ecosystems and Environment, Elsevier Masson, 2020, 301, pp.106970. ⟨10.1016/j.agee.2020.106970⟩. ⟨hal-02873434⟩
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Di Wang, Stephane Momo Takoudjou, Eric Casella. LeWoS: A universal leaf‐wood classification method to facilitate the 3D modelling of large tropical trees using terrestrial LiDAR. Methods in Ecology and Evolution, Wiley, 2020, 11 (3), pp.376-389. ⟨10.1111/2041-210X.13342⟩. ⟨hal-02516966⟩
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Monique Weemstra, Gregoire Freschet, Alexia Stokes, Catherine Roumet. Patterns in intraspecific variation in root traits are species‐specific along an elevation gradient. Functional Ecology, Wiley, In press, ⟨10.1111/1365-2435.13723⟩. ⟨hal-03030429⟩
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Ben Weinstein, Sergio Marconi, Mélaine Aubry‐kientz, Gregoire Vincent, Henry Senyondo, et al.. DeepForest: A Python package for RGB deep learning tree crown delineation. Methods in Ecology and Evolution, Wiley, 2020, 11 (12), pp.1743-1751. ⟨10.1111/2041-210X.13472⟩. ⟨hal-03073497⟩
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Boniface Tientcheu Yogom, Marie-Louise Avana-Tientcheu, Marcelle Franca Meguem Mboujda, Stephane Momo Takoudjou, Théophile Fonkou, et al.. Ethnicity Differences in Uses and Management Practices of Bitter Kola Trees (Garcinia kola) in Cameroon. Economic Botany, Springer Verlag, In press, ⟨10.1007/s12231-020-09508-x⟩. ⟨hal-03011883⟩
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Sami Youssef, Jocelyne Cambecedes, Errol Véla. Is the Mesopotamian region a main source of Western European segetal plants?. Botany Letters, Taylor & Francis, 2020, 167 (2), pp.290-299. ⟨10.1080/23818107.2020.1737222⟩. ⟨hal-02539573⟩
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Jenny Zembrano, Norbert J. Codeiro, Carol Garzon-Lopez, Lauren Yeager, Claire Fortunel, et al.. Investigating the direct and indirect effects of forest fragmentation on plant functional diversity. PLoS ONE, Public Library of Science, 2020, 15 (7), pp.e0235210. ⟨10.1371/journal.pone.0235210⟩. ⟨hal-02929062⟩
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Jinqi Zhu, Yunqi Wang, Yujie Wang, Zhun Mao, Eddy Langendoen. How does root biodegradation after plant felling change root reinforcement to soil?. Plant and Soil, Springer Verlag, 2020, 446 (1-2), pp.211-227. ⟨10.1007/s11104-019-04345-x⟩. ⟨hal-02477576⟩
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Xiai Zhu, Wenjie Liu, Jin Chen, L. Adrian Bruijnzeel, Zhun Mao, et al.. Reductions in water, soil and nutrient losses and pesticide pollution in agroforestry practices: a review of evidence and processes. Plant and Soil, Springer Verlag, In press, ⟨10.1007/s11104-019-04377-3⟩. ⟨hal-02490364⟩
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Beda Innocent Adji. Architecture and growth modelling of savannah agroforestry species native to Côte d’Ivoire. AMAPhD 2020, Nov 2020, Montpellier, France. ⟨hal-03033726⟩
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Colette Badourdine. Mapping tropical forest diversity from multi- and hyper-spectral imagery. AMAPhD 2020, Nov 2020, Montpellier, France. ⟨hal-03066868⟩
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Jean-François Barczi, Yves Caraglio, Eric Nicolini, Hervé Rey, Alexandre de Haldat. Modelling and simulating tree growth dynamics including both shootand root compartments. The RoCoCau+TOY model. FSPM 2020 : Towards Computable Plants. 9th International Conference on Functional-Structural Plant models, Oct 2020, Hanovre, Germany. ⟨hal-03053696⟩
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Raphaël Conde Salazar, Isabelle Mougenot, Alexia Stokes, Fabien Liagre, Jérôme Perez. A software application with ontology-based reasoning for agroforestry. 14th International Conference on Metadata and Semantics Research (MTSR 2020), Dec 2020, Madrid, Spain. ⟨hal-03099703⟩
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Raphaël Conde Salazar, Fabien Liagre, Isabelle Mougenot, Jérôme Perez, Alexia Stokes. Vers une démarche ontologique pour la capitalisation des données de l’agroforesterie. 31es Journées francophones d'Ingénierie des Connaissances, Sébastien Ferré, Jun 2020, Angers, France. ⟨hal-02888084⟩
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Roberta Dainese, Giuseppe Tedeschi, Thierry Fourcaud, Alessandro Tarantino. Measurement of xylem water pressure using High-Capacity Tensiometer and benchmarking against Pressure Chamber and Thermocouple Psychrometer. 4th European Conference on Unsaturated Soils (E-UNSAT 2020), Oct 2020, Lisboa, Portugal. pp.03014, ⟨10.1051/e3sconf/202019503014⟩. ⟨hal-03100395⟩
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Anne-Laure Decombeix, Jean Galtier, J. Broutin. Plants in the late Paleozoic ice age: insights from late Pennsylvanian and early Permian floras of France. GSA 2020 Connects Online, Oct 2020, Virtuel, United States. ⟨hal-03100156⟩
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Anne-Laure Decombeix. Reconstructing the biology of Paleozoic trees. 2nd Palaeontological Virtual Congress, May 2020, Virtuel, France. ⟨hal-03052355⟩
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Anne-Laure Decombeix, Jean Galtier, Brigitte Meyer-Berthaud, Cyrille Prestianni, Nick P. Rowe, et al.. A review of the Early Mississippian anatomically preserved flora from Montagne Noire. Botany 2020 - Virtual Botany Conference, Jul 2020, Virtuel, United States. ⟨hal-03052424⟩
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Pauline Défossez, Ming Yang, Sylvain Dupont, Frédéric Danjon, Thierry Fourcaud, et al.. Modeling tree anchorage. Side-Event icropm2020, Feb 2020, Montpellier, France. ⟨hal-02789797⟩
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Benjamin Deneu, Titouan Lorieul, Elijah Cole, Maximilien Servajean, Christophe Botella, et al.. Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF). CLEF 2020 - 11th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, thessaloniki, Greece. ⟨hal-02989077⟩
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Ana Sofia Dias, Alexia Stokes, Gianfranco Urciuoli. Castanea sativa Mill. plantations as a low-carbon landslide hazard mitigation measure. 2nd International Conference on Energy Geotechnics (ICEGT 2020),, International Society for Soil Mechanics and Geotechnical Engineering (ISSMGE), Sep 2020, La Jolla, California, USA, United States. pp.12003, ⟨10.1051/e3sconf/202020512003⟩. ⟨hal-03018831⟩
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Hervé Goëau, Pierre Bonnet, Alexis Joly. Overview of LifeCLEF Plant Identification task 2020. CLEF 2020 - Conference and labs of the Evaluation Forum, The CLEF Initiative, Sep 2020, Thessalonique, Greece. ⟨hal-02980085⟩
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Alexis Joly, Hervé Goëau, Stefan Kahl, Benjamin Deneu, Willem-Pier Vellinga, et al.. Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction. CLEF 2020 - 11th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩. ⟨hal-02945382⟩
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Alexis Joly, Hervé Goëau, Christophe Botella, Rafael Ruiz de Castaneda, Hervé Glotin, et al.. LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges. ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisbon, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩. ⟨hal-02873670⟩
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https://hal.inrae.fr/hal-02873670/file/Joly2020_Chapter_LifeCLEF2020TeaserBiodiversity.pdf BibTex
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Stefan Kahl, Mary Clapp, W Hopping, Hervé Goëau, Hervé Glotin, et al.. Overview of BirdCLEF 2020: Bird Sound Recognition in Complex Acoustic Environments. CLEF 2020, Sep 2020, Thessaloniki, Greece. ⟨hal-02989101⟩
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Fabien Michel, Jean-Christophe Soulié, Yves Dumont. Entre global et local, une méthode pour améliorer notre confiance dans les modèles multi-agents. Journées Francophones de la Modélisation et de la Simulation (JFMS), Nov 2020, Cargèse, France. ⟨hal-02988206⟩
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Kirsten Paff, Sebastian Munz, Rémi Vezy, Noémie Gaudio, Laurent Bedoussac, et al.. Calibration and Evaluation of the STICS Intercrop Model for Two Cereal-Legume Mixtures. ICROPM 2020 - Crop Modelling for the future, Feb 2020, Montpellier, France. ⟨hal-02565235⟩
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https://hal.umontpellier.fr/hal-02565235/file/K.Paff_STICS2020.pdf BibTex
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Raphael Perez, Rémi Vezy, Loïc Brancheriau, Frédéric Boudon, Doni Artanto Raharjo, et al.. Toward a functional-structural model of oil palm accounting for architectural plasticity in response to planting density.. FSPM 2020 : Towards Computable Plants. 9th International Conference on Functional-Structural Plant models, Oct 2020, Hanovre, Germany. ⟨hal-03053584⟩
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Alessandro Tarantino, Grainne El Mountassir, Simon Wheeler, Domenico Gallipoli, Giacomo Russo, et al.. TERRE project: interplay between unsaturated soil mechanics and low-carbon geotechnical engineering. 4th European Conference on Unsaturated Soils (E-UNSAT 2020), Oct 2020, Lisboa, Portugal. pp.01002, ⟨10.1051/e3sconf/202019501002⟩. ⟨hal-03100225⟩
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Simon Tega 2, Valaire Yatat, Jean-Jules Tewa, Pierre Couteron. A Minimalistic model of spatial structuration of humid savanna vegetation. CARI 2020 - Colloque Africain sur la recherche en Informatique et en Mathématiques Appliquées, Oct 2020, Thies, Senegal. ⟨hal-02926298⟩
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Chapitre d'ouvrage

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Fabien Anthelme, Gwendolyn Peyre. Biogeography of South American highlands, in Earth Systems and Environmental Sciences. Encyclopedia of the World's Biomes, Elsevier, 2020, 978-0128160961. ⟨hal-03040821⟩
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Sophie Gonzalez. Portraits croisés de deux « botanistes de terrain ». Noucher, M. (ed.); Polidori, L. (ed.). Atlas critique de la Guyane, CNRS, pp.140-141, 2020, 978-2-271-13213-0. ⟨hal-02991837⟩
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Sophie Gonzalez. L'Herbier de Guyane : une collection encore à compléter ?. Noucher, M. (ed.); Polidori, L. (ed.). Atlas critique de la Guyane, CNRS, pp.138-139, 2020, 978-2-271-13213-0. ⟨hal-02991826⟩
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Christophe Proisy, Romain Wackler, Elodie Blanchard, Antoine Gardel, Edward J. Anthony. Mangroves: a natural early warning system of erosion of open muddy coasts in French Guiana. Dynamic Sedimentary Environments of Mangrove Coasts, Elsevier, 2020, 9780128164372. ⟨hal-03105704⟩
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Frida Sidik, Denny Kusuma, Bayu Priyono, Christophe Proisy, Catherine E. Lovelock. Managing sediment dynamics through reintroduction of tidal flow for mangrove restoration in abandoned aquaculture ponds. Dynamic Sedimentary Environments of Mangrove Coasts, Elsevier, 2020, 9780128164372. ⟨hal-03106214⟩
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Eduardo Tusa, Anthony Laybros, Jean-Matthieu Monnet, Mauro Dalla Mura, Jean-Baptiste Barré, et al.. Fusion of hyperspectral imaging and LiDAR for forest monitoring. Data Handling in Science and Technology, 32, Elsevier, pp.281-303, 2020, Data Handling in Science and Technology, 978-0-444-63977-6. ⟨10.1016/B978-0-444-63977-6.00013-4⟩. ⟨hal-02443395⟩
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Lucie Zinger, Julian Donald, Sébastien Brosse, Mailyn Adriana Gonzalez, Amaia Iribar, et al.. Advances and prospects of environmental DNA in neotropical rainforests. Tropical Ecosystems in the 21st Century, 62, Academic Press, pp.331-373, 2020, Advances in Ecological Research, 978-0-12-821134-2. ⟨10.1016/bs.aecr.2020.01.001⟩. ⟨hal-02909735⟩
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Ouvrage (y compris édition critique et traduction)

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Roland Martin, Khellaf Rebbas, Errol Véla, Yassine Beghami, Abdelazize Franck Bougaham, et al.. Etude cartographique des orchidées de Kabylie, Numidie, Aurès (Algérie). Société Méditerranéenne d’Orchidologie, 2020. ⟨hal-02483998⟩
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Poster

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Sandrine Auzoux, Pascal Marnotte, Aude Ripoche, Marion Schwartz, Thomas Le Bourgeois, et al.. Capitalisation, publication et analyse de données sur l'étude des adventices dans les systèmes de culture tropicaux. Comités scientifique et technique du DPP SIAAM, Nov 2020, Saint-Denis de la Réunion, La Réunion. 2020. ⟨hal-03099602⟩
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Loïc Brancheriau, Sylvie-Annabel Sabatier, Marc Jaeger, Nicolas Hemery, Christ Mougani, et al.. Modelling the Guayule plant growth and development with a Functional Structural Plant Model. FSPM 2020 : Towards Computable Plants. 9th International Conference on Functional-Structural Plant models, Oct 2020, Hanovre, Germany. ⟨hal-03056119⟩
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Marc Jaeger, Sylvie-Annabel Sabatier, Philippe de Reffye, Ali Abed Alsater, Loïc Brancheriau. Efficient stochastic Functional Structural sympodial Shrubs Modelling based on structural hierarchy. Application to Guayule. FSPM2020: Towards Computable Plants, Oct 2020, Leibniz, Germany. ⟨hal-03105340⟩
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https://hal.inrae.fr/hal-03105340/file/FSPM2020_Jaeger_etal_virtual_plants.pdf BibTex
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Kirsten Paff, Sebastian Munz, Rémi Vezy, Noémie Gaudio, Laurent Bedoussac, et al.. Calibration and Evaluation of the STICS Intercrop Model for Two Cereal-Legume Mixtures. 2. International Crop Modelling Symposium (iCROPM2020), Feb 2020, Montpellier, France. 1 p., 2020. ⟨hal-02791381⟩
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Rémi Vezy, Raphael Perez, François Grand, Jean Dauzat. Light exchanges in discrete directions as an alternative to raytracing and radiosity. FSPM 2020 : Towards Computable Plants. 9th International Conference on Functional-Structural Plant models, Oct 2020, Hannover, Germany. ⟨hal-03105541⟩
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Rapport

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Péninna Deberdt, Philippe Legrand, Charles Manceau, Xavier Nesme, Valérie Olivier, et al.. Période de latence de Xylella fastidiosa sur le genre Citrus : Avis de l'Anses. Rapport d'expertise collective. [Rapport de recherche] Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail. 2020, 62 p. ⟨hal-02906098⟩
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Eric Verdin, Pascal Gentit, Stéphan Steyer, Thierry Wetzel, Thomas Le Bourgeois, et al.. Évaluation du risque simplifiée du tomato brown rugose fruit virus pour la France métropolitaine : Avis de l'Anses. Rapport d'expertise collective. Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail. 2020, 90 p. ⟨hal-02473673⟩
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Thèse

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Myriam Djoukwe Tapi. Mathematical modelling, analysis and simulations to improwe the control of Miridae, a cocoa pest. Systematics, Phylogenetics and taxonomy. Université de Douala, 2020. English. ⟨tel-03122705⟩
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Dimitri Justeau-Allaire. Constraint-based systematic conservation planning, a generic and expressive approach. Application to decision support in the conservation of New Caledonian forests.. Systematics, Phylogenetics and taxonomy. Université de Montpellier, 2020. English. ⟨tel-03122746⟩
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Pré-publication, Document de travail

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Roumen Anguelov, Yves Dumont, Ivric Valaire Yatat Djeumen. On the use of Traveling Waves for Pest/Vector elimination using the Sterile Insect Technique. 2020. ⟨hal-02955417⟩
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https://hal.archives-ouvertes.fr/hal-02955417/file/Travelling_Waves_TIS_PDE_arXiv.pdf BibTex
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Maria Soledad Aronna, Yves Dumont. On nonlinear pest/vector control via the Sterile Insect Technique: impact of residual fertility. 2020. ⟨hal-02567881⟩
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Stephanie Bodin, Jean-François Molino, Guillaume Odonne, Laurent Bremond. Unraveling pre-Columbian occupation patterns in the tropical forests of French Guiana using an anthracological approach. 2020. ⟨hal-02943053⟩
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Elijah Cole, Benjamin Deneu, Titouan Lorieul, Maximilien Servajean, Christophe Botella, et al.. The GeoLifeCLEF 2020 Dataset. 2020. ⟨hal-02989062⟩
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https://arxiv.org/pdf/2004.04192 BibTex
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Benjamin Deneu, Maximilien Servajean, Pierre Bonnet, François Munoz, Alexis Joly. Participation of LIRMM / Inria to the GeoLifeCLEF 2020 challenge. 2020. ⟨hal-02989084⟩
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https://hal.inria.fr/hal-02989084/file/paper_192.pdf BibTex
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Gregoire Freschet, Loic Pagès, Colleen Iversen, Louise Comas, Boris Rewald, et al.. A starting guide to root ecology: strengthening ecological concepts and standardizing root classification, sampling, processing and trait measurements. 2020. ⟨hal-02918834⟩
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Sebastien Levionnois, Niklas Tysklind, Eric Nicolini, Bruno Ferry, Valérie Troispoux, et al.. Soil variation response is mediated by growth trajectories rather than functional traits in a widespread pionner Neotropical tree. 2020. ⟨hal-02884893⟩
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Boris Rewald, Gregoire Freschet, Catherine Roumet, Alexia Stokes, Monique Weemstra, et al.. Root traits as key proxies to unravel plant and ecosystem functioning: entities, trait selection and outlook. 2020. ⟨hal-03028581⟩
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